Installation

Dependencies

Dependencies are listed in the DESCRIPTION file.

Installing from source

The easiest way to install the cmapR repository is to point your R’s install.packages function at a tarball of the cmapR archive. You can generate this archive by cloning this repository and doing the following:

# make a gzip tar ball of the repo
R CMD build cmapR # makes cmapR_1.0.tar.gz

# check that the package is ok
R CMD check cmapR_1.0.tar.gz

Once you have created the tarball, open an R terminal and execute the following:

install.packages("cmapR_1.0.tar.gz", type="source", repos=NULL)
library("cmapR")

You can also source individual files as needed instead of installing the entire package.

# For example, just load the IO methods
source("cmapR/R/io.R")``