Installation¶
Dependencies¶
Dependencies are listed in the DESCRIPTION
file.
Installing from source¶
The easiest way to install the cmapR
repository is to point your R’s install.packages
function at a tarball of the cmapR
archive. You can generate this archive by cloning this repository and doing the following:
# make a gzip tar ball of the repo
R CMD build cmapR # makes cmapR_1.0.tar.gz
# check that the package is ok
R CMD check cmapR_1.0.tar.gz
Once you have created the tarball, open an R terminal and execute the following:
install.packages("cmapR_1.0.tar.gz", type="source", repos=NULL)
library("cmapR")
You can also source individual files as needed instead of installing the entire package.
# For example, just load the IO methods
source("cmapR/R/io.R")``